Resources

Teaching

Here are some general programming tutorials I have created that you might find useful:

• A tutorial on using UNIX and an HPC
• Getting started with the command line including example files
• An introduction to AWK with example files
• An R cookbook with example files
• Data manipulation with dplyr
• Data visualization with ggplot2

For biologists, I also have tutorials on:

• Assembling a metagenome
• Genomic binning
• Annotating microbial genomes
• How to do phylogenetic analyses with example files

Videos

Here, you will find a lecture I gave as part of a workshop where I taught students about metagenomic assemblies, binning and annotations:

A talk I gave at the UBC in April 2021 where I discuss how Undinarchaeota illuminate DPANN phylogeny and the impact of gene transfer on evolution:

Part of a workshop where I introduce students into Phylogenetics as part of the ECOGEO ’Omics Training in 2016: